Publications

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Generalizable and Automated Classification of TNM Stage from Pathology Reports with External Validation

Published in Nature communications, 2024

We present a generalizable method for the automated classification of TNM stage from pathology report text

Recommended citation: Kefeli, J., Berkowitz, J., Acitores Cortina, J.M. et al. Generalizable and automated classification of TNM stage from pathology reports with external validation. Nat Commun 15, 8916 (2024). https://doi.org/10.1038/s41467-024-53190-9
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Biases in Race and Ethnicity Introduced by Filtering Electronic Health Records for’Complete Data’

Published in MedRxiv, 2024

In this study, we examined the race/ethnicity biases introduced by applying common filters to four clinical records databases

Recommended citation: Biases in Race and Ethnicity Introduced by Filtering Electronic Health Records for ‘Complete Data’ Jose M. Acitores Cortina, Yasaman Fatapour, Michael Zietz, Kathleen LaRow Brown, Undina Gisladottir, Danner Peter, Oliver John Bear Don’t Walk IV, Aditi Kuchi, Apoorva Srinivasan, Hongyu Liu, Jacob Berkowitz, Kevin Tsang, Nadine Friedrich, Sophia Kievelson, Nicholas P. Tatonetti medRxiv 2024.10.04.24314914; doi: https://doi.org/10.1101/2024.10.04.24314914
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Biomedical Text Normalization through Generative Modeling

Published in MedRxiv, 2024

In this study, we develop and assess text normalization pipelines built using large-language models

Recommended citation: Biomedical Text Normalization through Generative Modeling Jacob S. Berkowitz, Yasaman Fatapour, Apoorva Srinivasan, Jose Miguel Acitores Cortina, Nicholas P Tatonetti medRxiv 2024.09.30.24314663; doi: https://doi.org/10.1101/2024.09.30.24314663
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